P13_wt5, Patient 2 control 1

General#

Cell Line

hPSCreg Name UKAi007-A
Alternative name(s)
P13_wt5, Patient 2 control 1
Cell line type Human induced pluripotent stem cell (hiPSC)
Last update 1st March 2021
Notes Toledo et al., Blood, ePub ahead of print, 2020 Dec 23
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Provider

Generator Universitätsklinikum Aachen (UKA)
Owner Universitätsklinikum Aachen (UKA)
Distributors
Derivation country Germany

External Databases

BioSamples SAMEA8268471

General Information

Publications
* Is the cell line readily obtainable for third parties?
Yes
Research: allowed
Clinical: not allowed
Commercial: not allowed

Donor Information#

General Donor Information

Sex male
Age of donor (at collection) 90-94

Phenotype and Disease related information (Donor)

Diseases A disease was diagnosed.
systemic mastocytosis
Acute systemic mastocytosis (ASM) The donor bone marrow cells (primary sample) used for reprogramming and iPSC generation are heterogeneous and genetically mosaic. Therefore the two iPSC lines from this donor (UKAi007-A and UKAi007-B) have different allele frequencies than the primary sample for the mutations tested. Please see Table 1 of Toledo et al. 2021 for the allele frequencies of the primary sample and the iPSC lines.
The donor is a carrier of a disease-associated mutation and affected.
Stage
35% mast cell burden in bone marrow
Synonyms
  • SMCD - systemic mast cell disease
  • systemic tissue mast cell disease
Genetic variants
ABL1 (target)
9q34.12
NM_007313.2:c.2173G>A
NP_009297.2:p.Gly725Ser
Heterozygous
RCV000119949.1
ASXL1 (target)
20q11.21
NM_015338.6:c.2444T>C
p.Leu815Pro
Homozygous
IDH1 (target)
2q34
NM_005896.2:c.532G>A
NP_005887.2:p.Val178Ile
Heterozygous
RCV000121207.1
KIT (target)
4q12
NM_000222.3:c.2447A>T
NP_000213.1:p.Asp816Val
Heterozygous
VCV000013852.5
PDGFRA (target)
4q12
NM_006206.6:c.1432T>C
NP_006197.1:p.Ser478Pro
Heterozygous
VCV000041794.4
RUNX1 (target)
21q22.12
NM_001754:c.399G>A
p.Met133Ile
Heterozygous
SRSF2 (target)
38.p13
NM_001195427.1:c.284_307del
p.Pro95_Arg102del
Heterozygous
TET2 (target)
4q24
NM_001127208.2:c.3781C>T
NP_001120680.1:p.Arg1261Cys
Heterozygous
TET2 (target)
NM_001127208:c.3876C>G
p.Ser1292Arg
Heterozygous
TP53 (target)
17p13.1
NM_000546.6:c.215C>G
NP_000537.3:p.Pro72Arg
Homozygous
VCV000012351.11
RUNX1 (target)
NM_001754:c.302_318del
p.Val101Alafs*31
Heterozygous
TET2 (target)
NM_001127208:c.4393C>T
p.Arg1465Ter
Heterozygous

Karyotyping (Donor)

Has the donor karyotype been analysed?
No

Other Genotyping (Donor)

Is there genome-wide genotyping or functional data available?
No

Donor Relations

Other cell lines of this donor

External Databases (Donor)

BioSamples SAMEA8268476

Ethics#

Has informed consent been obtained from the donor of the embryo/tissue from which the pluripotent stem cells have been derived? Yes
Was the consent voluntarily given? Yes
Has the donor been informed that participation will not directly influence their personal treatment? Yes
Can you provide us with a copy of the Donor Information Sheet provided to the donor? No
Provide contact information of the holder of the original Donor Information Sheet: Medical University of Vienna, Vienna, Austria
Do you (Depositor/Provider) hold the original Donor Consent Form? No
If you do not hold the Donor Consent Form, do you know who does? Yes
Contact information / weblink Medical University of Vienna, Vienna, Austria
If you do not hold the SIGNED Donor Consent Form, have you obtained a copy of the unsigned Donor Consent Form from the holder? No
Alternatives to consent are available? No
Is there other documentation provided to the donor for consenting purposes? No
Confirm that consent was obtained by a qualified professional Yes
Has the donor agreed to be re-contacted? Unknown
Has the donor been informed about how her/his data will be protected? Yes
Please indicate whether the data associated with the donated material has been pseudonymised or anonymised. pseudonymised
Does consent explicitly allow the derivation of pluripotent stem cells? Yes
Does consent expressly prevent the derivation of pluripotent stem cells? No
Does consent pertain to a specific research project? No
Does consent permit unforeseen future research, without further consent? Yes
Does the consent permit uses of donated embryo/tissue or derived cell line intended for clinical treatment or human applications? No
Does consent expressly prevent development of commercial products? No
Does consent expressly prevent financial gain from any use of the donated embryo/tissue, including any product made from it? No
Does consent expressly permit storage of donated embryo/tissue for an unlimited time? Yes
Does consent expressly permit storage of cells derived from the donated embryo/tissue for an unlimited time? Yes
Does consent prevent the DONATED BIOSAMPLE from being made available to researchers anywhere in the world? No
Does consent prevent CELLS DERIVED FROM THE DONATED BIOSAMPLE from being made available to researchers anywhere in the world? No

Does consent permit research by

an academic institution? Yes
a public organisation? Yes
a non-profit company? Yes
a for-profit corporation? Yes
Does consent expressly permit collection of genetic information? Yes
Does consent expressly permit storage of genetic information? Yes
Does consent prevent dissemination of genetic information? Yes
Has the donor been informed that their donated biosample or derived cells may be tested for the presence of microbiological agents / pathogens? No
Has the donor consented to receive information discovered during use of donated embryo/tissue that has significant health implications for the donor? No
How may genetic information associated with the cell line be accessed? Controlled Access
Will the donor expect to receive financial benefit, beyond reasonable expenses, in return for donating the biosample? No
Does the consent anticipate that the donor will be notified of results or outcomes of any research involving the donated samples or derived cells? No
Does the consent permit the donor, upon withdrawal of consent, to stop the use of the derived cell line(s) that have already been created from donated samples? Yes
Does the consent permit the donor, upon withdrawal of consent, to stop delivery or use of information and data about the donor? Yes
Does consent permit access to medical records of the donor? No
Does consent permit access to any other source of information about the clinical treatment or health of the donor? No
Has a favourable opinion been obtained from a research ethics committee, or other ethics review panel, in relation to the Research Protocol including the consent provisions? Yes
Name of accrediting authority involved? Medical University of Vienna ethics board, Vienna, Austria
Approval number EK1184/2014
Has a favourable opinion been obtained from a research ethics committee, or other ethics review panel, in relation to the PROPOSED PROJECT, involving use of donated embryo/tissue or derived cells? Yes
Name of accrediting authority involved? Medical University of Vienna ethics board, Vienna, Austria
Approval number EK1184/2014
Do you have obligations to third parties in regard to the use of the cell line? No
Are you aware of any further constraints on the use of the donated embryo/tissue or derived cells? No
Is there an MTA available for the cell line? Yes
For generation of the cell line, who was the supplier of any recombined DNA vectors or commercial kits used? Life Technologies
Are you aware of any constraints on the use or distribution of the cell line from the owner or any parties identified in the query above? No

hIPSC Derivation#

General

Source cell type
Bone Marrow
The tissue occupying the spaces of bone. It consists of blood vessel sinuses and a network of hematopoietic cells which give rise to the red cells, white cells, and megakaryocytes.
Synonyms
  • BONE MARROW
  • Bone Marrow
  • Reticuloendothelial System, Bone Marrow
  • bone marrow
show more synonyms
Source cell origin
Bone Marrow
The tissue occupying the spaces of bone. It consists of blood vessel sinuses and a network of hematopoietic cells which give rise to the red cells, white cells, and megakaryocytes.
Synonyms
  • BONE MARROW
  • Bone Marrow
  • Reticuloendothelial System, Bone Marrow
  • bone marrow
show more synonyms
Source cell type (free text) CD117+ cells (MACS)
Age of donor (at collection) 90-94
Collected in 2016
Passage number reprogrammed 0

Reprogramming method

Vector type Non-integrating
Vector Sendai virus
Genes
Is reprogramming vector detectable?
Unknown

Vector free reprogramming

Other

Selection criteria for clones ES cell like morphology
Derived under xeno-free conditions
No
Derived under GMP?
No
Available as clinical grade?
No

Culture Conditions#

Surface coating Gelatin
Feeder cells mouse embryonic fibroblasts
Passage method Enzymatically
Collagenase
O2 Concentration 21 %
CO2 Concentration 5 %
Medium Other medium:
Base medium: Knock out DMEM
Main protein source: Knock-out serum replacement
Serum concentration: 20 %
Supplements
bFGF 10 ng/ml
Has Rock inhibitor (Y27632) been used at passage previously with this cell line?
Yes
Has Rock inhibitor (Y27632) been used at cryo previously with this cell line?
Yes
Has Rock inhibitor (Y27632) been used at thaw previously with this cell line?
Yes

Characterisation#

Analysis of Undifferentiated Cells
Marker Expressed Immunostaining RT-PCR FACS Enzymatic Assay Expression Profiles
NANOG
Yes
POU5F1 (OCT-4)
Yes
TRA 1-60
Yes
TRA 1-81
Yes
Score: 0.23
Marker Present Absent
mCpG X
OCT4 X

Microbiology / Virus Screening

HIV 1 Negative
HIV 2 Negative
Hepatitis B Negative
Hepatitis C Negative
Mycoplasma Negative

Genotyping#

Karyotyping (Cell Line)

Has the cell line karyotype been analysed?
Yes
46 XY
Karyotyping method: G-Banding

Other Genotyping (Cell Line)