HPSI0813i-ffdc_1

General#

Cell Line

hPSCreg Name WTSIi381-A
Alternative name(s)
HPSI0813i-ffdc_1
Cell line type Human induced pluripotent stem cell (hiPSC)
Last update 10th January 2018

Provider

Generator Wellcome Trust Sanger Institute (WTSI)

External Databases

EBiSC 77650002
HipSci HPSI0813i-ffdc_1
BioSamples SAMEA2398883

General Information

Is the cell line available in principle? Available with restrictions: Available for non-commercial research

Donor Information#

General Donor Information

Sex male

Phenotype and Disease related information (Donor)

Diseases No disease was diagnosed.

External Databases (Donor)

BioSamples SAMEA2398645

Ethics#

We are currently revising the public data view for cell lines registered in hPSCreg. This section will be visible again in the next weeks.

hIPSC Derivation#

General

Source cell type
fibroblast
A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped.
Source cell origin
zone of skin
Any portion of the organ that covers that body and consists of a layer of epidermis and a layer of dermis.
Synonyms
  • portion of skin
  • skin zone
  • region of skin
  • skin region
  • skin
show more synonyms
Age of donor (at collection) 40-44

Reprogramming method

Vector type Non-integrating
Vector Episomal

Vector free reprogramming

Other

Derived under xeno-free conditions
Unkown
Derived under GMP?
Unkown
Available as clinical grade?
Unkown

Culture Conditions#

Feeder cells
Yes
Passage method Enzymatically
Collagenase and Dispase
CO2 Concentration 5 %
Medium Other medium:
Base medium:
Main protein source:
Serum concentration: %

Characterisation#

Analysis of Undifferentiated Cells
Pluripotency Score Novelty Score
43.769 1.332

Genotyping#

Karyotyping (Cell Line)

Has the cell line karyotype been analysed?
No

Other Genotyping (Cell Line)

Is there genome-wide genotyping or functional data available?
Yes
cnv
http://www.hipsci.org/lines/#/lines/HPSI0813i-ffdc_1
Number of regions different from primary tissue: 1; Length of differences from primary tissue: 1
Exome sequencing
https://ega-archive.org/datasets/EGAD00001003514
mpileup variant calls
Exome sequencing
https://ega-archive.org/datasets/EGAD00001003514
BWA alignment
Exome sequencing
https://ega-archive.org/datasets/EGAD00001003514
Raw sequencing reads
Genotyping array
https://ega-archive.org/datasets/EGAD00010001147
Genotyping array calls
Genotyping array
https://ega-archive.org/datasets/EGAD00010001147
Imputed and phased genotypes
Methylation profiling
https://ega-archive.org/datasets/EGAD00010001139
Array signal intensity data
Methylation profiling
https://ega-archive.org/datasets/EGAD00010001139
Text file with probe intensities
RNA-seq
https://ega-archive.org/datasets/EGAD00001003529
Abundances of transcripts
Exome sequencing
https://ega-archive.org/datasets/EGAD00001003514
Imputed and phased genotypes
Genotyping array
https://ega-archive.org/datasets/EGAD00010001147
Array signal intensity data
RNA-seq
https://ega-archive.org/datasets/EGAD00001003529
Splice-aware STAR alignment

Genetic Modification#

Genetic Modifications (other than for reprogramming)
No