UTSWi001-A-1

FA1ic

General

Cell Line

hPSCreg name UTSWi001-A-1
Cite as:
UTSWi001-A-1
Alternative name(s)
FA1ic
Cell line type Human induced pluripotent stem cell (hiPSC)
Similar lines
UTSWi001-A
(FA1)
Donor diseases:
Friedreich Ataxia
UTSWi002-A-1
(FA2ic)
Donor diseases:
Friedreich Ataxia
UTSWi003-A-1
(FA3ic)
Donor's gene variants:
fxn
Donor diseases:
Friedreich Ataxia
UTSWi001-A-3
(FAN1ic)
Donor diseases:
Friedreich Ataxia
UTSWi001-A-2
(FAN1)
Donor diseases:
Friedreich Ataxia
IGIBi012-A
(FA-hiPSC_001)
Donor diseases:
Friedreich Ataxia
IGIBi013-A
(FA_hiPSC_002)
Donor diseases:
Friedreich Ataxia
IGIBi016-A
(FA-hiPSC_005)
Donor diseases:
Friedreich Ataxia
USFi001-A
(1CN1.5)
Donor diseases:
Friedreich Ataxia
UTSWi002-A
(FA2)
Donor diseases:
Friedreich Ataxia
UTSWi002-A-3
(FAN2ic)
Donor diseases:
Friedreich Ataxia
UTSWi003-A
(FA3)
Donor's gene variants:
fxn
Donor diseases:
Friedreich Ataxia
UTSWi002-A-2
(FAN2)
Donor diseases:
Friedreich Ataxia
UTSWi003-A-2
(FAN3)
Donor's gene variants:
fxn
Donor diseases:
Friedreich Ataxia
UTSWi003-A-3
(FAN3ic)
Donor's gene variants:
fxn
Donor diseases:
Friedreich Ataxia
Last update 25th March 2024
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Provider

Generator University of Texas Southwestern Medical Center (UTSW)
Derivation country United States

External Databases

BioSamples SAMEA115428389

General Information

* Is the cell line readily obtainable for third parties?
No
Subclone of

Donor Information

General Donor Information

Sex male

Phenotype and Disease related information (Donor)

Diseases A disease was diagnosed.
The donor is not a carrier of a disease-associated mutation and affected.
Synonyms
  • Friedreich's Ataxia
  • Friedreich Ataxia
  • Friedreich ataxia
Genetic variants
cell line with homozygous GAA expansion
Family history none
Is the medical history available upon request? limited
Is clinical information available? limited

Karyotyping (Donor)

Has the donor karyotype been analysed?
Yes
46XY
Karyotyping method: G-Banding

Other Genotyping (Donor)

Is there genome-wide genotyping or functional data available?
No

External Databases (Donor)

BioSamples SAMEA115425256

Ethics

Also have a look at the ethics information for the parental line UTSWi001-A .
Is there an MTA available for the cell line? Yes
For generation of the cell line, who was the supplier of any recombined DNA vectors or commercial kits used?
Are you aware of any constraints on the use or distribution of the cell line from the owner or any parties identified in the query above? No

hIPSC Derivation

General

The source cell information can be found in the parental cell line UTSWi001-A.

Reprogramming method

Vector type Non-integrating
Vector Sendai virus
Is reprogramming vector detectable?
No
Methods used
Immunostaining, RT-PCR

Vector free reprogramming

Other

Derived under xeno-free conditions
Unknown
Derived under GMP?
Unknown
Available as clinical grade?
Unknown

Culture Conditions

Surface coating Matrigel/Geltrex
Feeder cells
No
Passage method Enzymatically
Dispase
O2 Concentration 21 %
CO2 Concentration 5 %
Medium mTeSR™ 1
Has Rock inhibitor (Y27632) been used at passage previously with this cell line?
Yes
Has Rock inhibitor (Y27632) been used at cryo previously with this cell line?
No
Has Rock inhibitor (Y27632) been used at thaw previously with this cell line?
Yes

Characterisation

Analysis of Undifferentiated Cells
Marker Expressed Immunostaining RT-PCR Flow Cytometry Enzymatic Assay Expression Profiles
POU5F1 (OCT-4)
Yes
SSEA-4
Yes
Differentiation Potency
Endoderm
Ont Id: UBERON_0000925
In vitro directed differentiation
Marker Expressed
foxa2
Yes
sox17
Yes
Mesoderm
Ont Id: UBERON_0000926
In vitro directed differentiation
Marker Expressed
tbxt2
Yes
ncam1
Yes
Ectoderm
Ont Id: UBERON_0000924
In vitro directed differentiation
Marker Expressed
pax6
Yes
nestin
Yes

Microbiology / Virus Screening

Mycoplasma Negative

Genotyping

Karyotyping (Cell Line)

Has the cell line karyotype been analysed?
Yes
46XY
Karyotyping method: G-Banding

Other Genotyping (Cell Line)

Genetic Modification

Disease/phenotype related modifications
Synonyms
  • Friedreich's Ataxia
  • Friedreich Ataxia
  • Friedreich ataxia
Genetic modifications
fxn (target)
Isogenic modification
Homozygous
CRISPT-Cas9 mediated excision of the expanded GAA repeats in the intron 1 of the FXN gene.
Mutated