IMBAi017-A-3

Pat.2 ARID1B+/- clone 2b (XX)

The cell line is not validated yet.

General

Cell Line

hPSCreg name IMBAi017-A-3
Cite as:
IMBAi017-A-3 (RRID:CVCL_E4GZ)
Alternative name(s)
Pat.2 ARID1B+/- clone 2b (XX)
Cell line type Human induced pluripotent stem cell (hiPSC)
Similar lines No similar lines found.
Last update 11th December 2024
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Provider

Generator Institute of Molecular Biotechnology (IMBA)

External Databases

BioSamples SAMEA117399235
Cellosaurus CVCL_E4GZ

General Information

Publications
* Is the cell line readily obtainable for third parties?
Yes
Research use: allowed
Clinical use: not allowed
Commercial use: allowed
Subclone of

Donor Information

General Donor Information

Sex female

Phenotype and Disease related information (Donor)

Diseases A disease was diagnosed.
The donor is a carrier of a disease-associated mutation and affected.
Synonyms
  • Coffin-Siris Syndrome

External Databases (Donor)

BioSamples SAMEA115296939

Ethics

Also have a look at the ethics information for the parental line IMBAi017-A .
For generation of the cell line, who was the supplier of any recombined DNA vectors or commercial kits used?

hIPSC Derivation

General

The source cell information can be found in the parental cell line IMBAi017-A.

Reprogramming method

Vector type Non-integrating
Vector Sendai virus
Is reprogramming vector detectable?
No
Methods used
RT-PCR

Vector free reprogramming

Other

Derived under xeno-free conditions
No
Derived under GMP?
No
Available as clinical grade?
No

Culture Conditions

Surface coating Matrigel/Geltrex
Feeder cells
No
Medium mTeSR™ Plus

Characterisation

Analysis of Undifferentiated Cells
Marker Expressed Immunostaining RT-PCR Flow Cytometry Enzymatic Assay Expression Profiles
TRA 1-60
Yes
SSEA-4
Yes
SSEA5
Yes
Differentiation Potency
Endoderm
Ont Id: UBERON_0000925
In vitro directed differentiation
Marker Expressed
SOX17
Yes
CXCR4
Yes
Mesoderm
Ont Id: UBERON_0000926
In vitro directed differentiation
Marker Expressed
CD140b
Yes
CDH5
Yes
Ectoderm
Ont Id: UBERON_0000924
In vitro directed differentiation
Marker Expressed
PAX6
Yes
SOX2
Yes

Microbiology / Virus Screening

HIV 1 Negative
HIV 2 Negative
Hepatitis B Negative
Hepatitis C Negative
Mycoplasma Negative

Genotyping

Karyotyping (Cell Line)

Has the cell line karyotype been analysed?
Yes
X, X
Karyotyping method: Molecular karyotyping by SNP array
http://

Other Genotyping (Cell Line)

Genetic Modification

Genetic modifications not related to a disease
Transgene expression
The clone Pat.2 ARID1B+/- clone 2b (XX)/ IMBAi017-A-3 went through CRISPR/Cas9 genome editing procedure as described in Martins-Costa Catarina et al. ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum. Cell Stem Cell. 2024-06-00., but did not get edited. It was used in scRNA-seq experiments as a control for off-target effects.
CRISPR-associated (CRISPR/Cas) System